EAQ05764.1 protein (Yoonia vestfoldensis SKA53)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Yoonia vestfoldensis SKA53

NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EAQ05236.1	EAQ05764.1	SKA53_05655	SKA53_06657	Hypothetical protein; COG0791 Cell wall-associated hydrolases (invasion-associated proteins).	TPR domain protein; COG0457 FOG: TPR repeat.	0.643
EAQ05236.1	EAQ06675.1	SKA53_05655	SKA53_14046	Hypothetical protein; COG0791 Cell wall-associated hydrolases (invasion-associated proteins).	Carboxyl-terminal protease family protein; COG0793 Periplasmic protease; Belongs to the peptidase S41A family.	0.649
EAQ05764.1	EAQ05236.1	SKA53_06657	SKA53_05655	TPR domain protein; COG0457 FOG: TPR repeat.	Hypothetical protein; COG0791 Cell wall-associated hydrolases (invasion-associated proteins).	0.643
EAQ05764.1	EAQ06675.1	SKA53_06657	SKA53_14046	TPR domain protein; COG0457 FOG: TPR repeat.	Carboxyl-terminal protease family protein; COG0793 Periplasmic protease; Belongs to the peptidase S41A family.	0.799
EAQ05764.1	EAQ06690.1	SKA53_06657	SKA53_14121	TPR domain protein; COG0457 FOG: TPR repeat.	Hypothetical protein; COG0791 Cell wall-associated hydrolases (invasion-associated proteins).	0.643
EAQ05764.1	rho	SKA53_06657	SKA53_11883	TPR domain protein; COG0457 FOG: TPR repeat.	Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.	0.481
EAQ06675.1	EAQ05236.1	SKA53_14046	SKA53_05655	Carboxyl-terminal protease family protein; COG0793 Periplasmic protease; Belongs to the peptidase S41A family.	Hypothetical protein; COG0791 Cell wall-associated hydrolases (invasion-associated proteins).	0.649
EAQ06675.1	EAQ05764.1	SKA53_14046	SKA53_06657	Carboxyl-terminal protease family protein; COG0793 Periplasmic protease; Belongs to the peptidase S41A family.	TPR domain protein; COG0457 FOG: TPR repeat.	0.799
EAQ06675.1	EAQ06690.1	SKA53_14046	SKA53_14121	Carboxyl-terminal protease family protein; COG0793 Periplasmic protease; Belongs to the peptidase S41A family.	Hypothetical protein; COG0791 Cell wall-associated hydrolases (invasion-associated proteins).	0.753
EAQ06690.1	EAQ05764.1	SKA53_14121	SKA53_06657	Hypothetical protein; COG0791 Cell wall-associated hydrolases (invasion-associated proteins).	TPR domain protein; COG0457 FOG: TPR repeat.	0.643
EAQ06690.1	EAQ06675.1	SKA53_14121	SKA53_14046	Hypothetical protein; COG0791 Cell wall-associated hydrolases (invasion-associated proteins).	Carboxyl-terminal protease family protein; COG0793 Periplasmic protease; Belongs to the peptidase S41A family.	0.753
rho	EAQ05764.1	SKA53_11883	SKA53_06657	Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.	TPR domain protein; COG0457 FOG: TPR repeat.	0.481