Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05797.1Hypothetical protein; COG2319 FOG: WD40 repeat. (108 aa)    
Predicted Functional Partners:
EAQ05798.1
Hypothetical protein; COG3568 Metal-dependent hydrolase.
 
     0.649
EAQ06603.1
Hypothetical protein; COG1716 FOG: FHA domain.
  
     0.540
EAQ06601.1
Hypothetical protein; COG0699 Predicted GTPases (dynamin-related).
  
     0.539
EAQ05799.1
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
 
     0.533
EAQ07004.1
RNA polymerase sigma-70 factor.
  
     0.528
EAQ06532.1
Hypothetical protein.
  
     0.506
EAQ07933.1
Hypothetical protein.
  
     0.476
EAQ06600.1
Hypothetical protein; COG0699 Predicted GTPases (dynamin-related).
  
     0.466
EAQ05394.1
Hypothetical protein.
  
     0.433
EAQ08037.1
Hypothetical protein.
  
     0.420
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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