Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ05801.1ABC transporter, ATPase subunit; COG1116 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component. (266 aa)    
Predicted Functional Partners:
EAQ05802.1
ABC transporter, periplasmic substrate binding protein; COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
 
 0.994
EAQ05800.1
ABC transporter, inner membrane subunit; COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
 
 0.989
EAQ05560.1
ABC transporter, inner membrane subunit; COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
 
 0.902
EAQ08178.1
ABC transporter, permease protein; COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
 
 0.885
EAQ08179.1
ABC transporter, permease protein; COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component.
 
 0.885
EAQ05562.1
ABC transporter, periplasmic binding protein; COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
 
 0.815
EAQ08177.1
ABC transporter, periplasmic substrate-binding protein; COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
 
 0.807
EAQ05810.1
Hypothetical protein; COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.
  
 
 0.632
EAQ05803.1
Hypothetical protein.
       0.561
modB
Molybdate transport permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
   
 0.507
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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