STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05811.1Hypothetical protein; COG4989 Predicted oxidoreductase. (296 aa)    
Predicted Functional Partners:
EAQ05810.1
Hypothetical protein; COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.
 
     0.962
EAQ05809.1
Hypothetical protein; COG2188 Transcriptional regulators.
 
    0.914
EAQ05808.1
Putative oxidoreductase protein; COG0673 Predicted dehydrogenases and related proteins.
 
     0.910
EAQ05813.1
Hypothetical protein; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.877
EAQ05812.1
COG1853 Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family.
       0.853
EAQ05815.1
TRAP dicarboxylate transporter, DctP subunit; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
     0.751
EAQ05814.1
Probable ABC transporter permease protein; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
 
     0.624
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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