Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EAQ05817.1Hypothetical protein. (105 aa)    
Predicted Functional Partners:
EAQ05818.1
Cyclic nucleotide-binding protein; COG0664 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases.
 
     0.853
EAQ05816.1
COG0659 Sulfate permease and related transporters (MFS superfamily).
 
     0.681
EAQ05819.1
MOFRL domain protein; COG2379 putative glycerate kinase.
       0.631
xylA
COG2115 Xylose isomerase; Belongs to the xylose isomerase family.
       0.560
xylB
Xylulose kinase; COG1070 Sugar (pentulose and hexulose) kinases.
       0.560
EAQ05822.1
COG1129 ABC-type sugar transport system, ATPase component.
       0.560
EAQ05823.1
COG4214 ABC-type xylose transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
       0.460
EAQ08001.1
Hypothetical protein; COG0395 ABC-type sugar transport system, permease component.
  
     0.414
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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