Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
xylACOG2115 Xylose isomerase; Belongs to the xylose isomerase family. (433 aa)    
Predicted Functional Partners:
xylB
Xylulose kinase; COG1070 Sugar (pentulose and hexulose) kinases.
 
 
 0.997
EAQ07381.1
COG0246 Mannitol-1-phosphate/altronate dehydrogenases.
    
 0.888
EAQ05823.1
COG4214 ABC-type xylose transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.874
EAQ05825.1
Xylose operon repressor; COG1940 Transcriptional regulator/sugar kinase.
 
  
 0.869
EAQ05822.1
COG1129 ABC-type sugar transport system, ATPase component.
 
  
 0.850
EAQ07017.1
Putative Fructokinase; COG0524 Sugar kinases, ribokinase family.
     
 0.840
EAQ05202.1
COG0837 Glucokinase; Belongs to the bacterial glucokinase family.
     
 0.830
EAQ05824.1
ABC sugar (xylose) transporter, periplasmic binding protein; COG4213 ABC-type xylose transport system, periplasmic component.
 
  
 0.815
EAQ05856.1
Hypothetical protein; COG3822 ABC-type sugar transport system, auxiliary component.
     
  0.815
EAQ05396.1
Hypothetical protein; COG1940 Transcriptional regulator/sugar kinase.
    
 0.755
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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