STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05823.1COG4214 ABC-type xylose transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. (445 aa)    
Predicted Functional Partners:
EAQ05824.1
ABC sugar (xylose) transporter, periplasmic binding protein; COG4213 ABC-type xylose transport system, periplasmic component.
 
 0.999
EAQ05822.1
COG1129 ABC-type sugar transport system, ATPase component.
 
 0.975
EAQ07188.1
COG1129 ABC-type sugar transport system, ATPase component.
 
 0.913
EAQ07229.1
Hypothetical protein; COG1129 ABC-type sugar transport system, ATPase component.
 
 0.859
xylA
COG2115 Xylose isomerase; Belongs to the xylose isomerase family.
 
  
 0.846
EAQ05826.1
FG-GAP repeat domain protein.
 
     0.832
xylB
Xylulose kinase; COG1070 Sugar (pentulose and hexulose) kinases.
 
    0.829
EAQ06199.1
Sugar ABC transporter, ATP-binding protein; COG1129 ABC-type sugar transport system, ATPase component.
 
 0.787
EAQ07186.1
Putative rhizopine uptake ABC transporter periplasmic solute-binding protein precursor; COG1879 ABC-type sugar transport system, periplasmic component.
 
  0.735
EAQ05825.1
Xylose operon repressor; COG1940 Transcriptional regulator/sugar kinase.
 
     0.725
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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