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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05825.1Xylose operon repressor; COG1940 Transcriptional regulator/sugar kinase. (421 aa)    
Predicted Functional Partners:
EAQ05826.1
FG-GAP repeat domain protein.
 
     0.955
EAQ06093.1
COG0381 UDP-N-acetylglucosamine 2-epimerase.
 
    
 0.903
EAQ07715.1
Mannose-6-phosphate isomerase /; COG0836 Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
    
 0.876
xylA
COG2115 Xylose isomerase; Belongs to the xylose isomerase family.
 
  
 0.872
EAQ05824.1
ABC sugar (xylose) transporter, periplasmic binding protein; COG4213 ABC-type xylose transport system, periplasmic component.
 
     0.860
EAQ05397.1
Hypothetical protein; COG1820 N-acetylglucosamine-6-phosphate deacetylase.
 
 
 0.835
pgi
COG0166 Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 
 0.784
EAQ05208.1
Hypothetical protein; COG0366 Glycosidases.
    
 0.777
EAQ06498.1
Putative Glycoside hydrolase; COG1472 Beta-glucosidase-related glycosidases.
    
 0.771
glmS
D-fructose-6-phosphate amidotransferase; Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.
  
 
 0.771
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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