Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ05826.1FG-GAP repeat domain protein. (493 aa)    
Predicted Functional Partners:
EAQ05825.1
Xylose operon repressor; COG1940 Transcriptional regulator/sugar kinase.
 
     0.954
EAQ05824.1
ABC sugar (xylose) transporter, periplasmic binding protein; COG4213 ABC-type xylose transport system, periplasmic component.
 
     0.914
EAQ05823.1
COG4214 ABC-type xylose transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
     0.850
EAQ05822.1
COG1129 ABC-type sugar transport system, ATPase component.
 
     0.804
EAQ05827.1
Methylamine utilization protein MauG, putative; COG1858 Cytochrome c peroxidase.
  
   
 0.795
xylA
COG2115 Xylose isomerase; Belongs to the xylose isomerase family.
 
     0.651
EAQ06675.1
Carboxyl-terminal protease family protein; COG0793 Periplasmic protease; Belongs to the peptidase S41A family.
   
   0.589
ribB
Bifunctional GTP cyclohydrolaseII/3,4-dihydroxy-2butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.521
EAQ06517.1
COG0840 Methyl-accepting chemotaxis protein.
     
  0.519
EAQ06858.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
     
  0.519
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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