STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05835.1Glycosyltransferase, family 2; COG1215 Glycosyltransferases, probably involved in cell wall biogenesis. (633 aa)    
Predicted Functional Partners:
EAQ05959.1
Hypothetical protein.
  
 
 0.954
EAQ07484.1
COG2003 DNA repair proteins; Belongs to the UPF0758 family.
  
    0.877
EAQ06118.1
DNA processing protein DprA, putative; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.
  
    0.861
EAQ07554.1
Hypothetical protein; COG2202 FOG: PAS/PAC domain.
  
    0.747
carA
COG0505 Carbamoylphosphate synthase small subunit; Belongs to the CarA family.
       0.731
EAQ06785.1
Zinc carboxypeptidase A metalloprotease (M14); COG0438 Glycosyltransferase.
  
 
 0.692
EAQ07715.1
Mannose-6-phosphate isomerase /; COG0836 Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.690
EAQ05332.1
Putative polysaccharide deacetylase; COG0726 Predicted xylanase/chitin deacetylase.
  
 
 0.649
EAQ06022.1
Polysaccharide deacetylase family protein; COG0726 Predicted xylanase/chitin deacetylase.
  
 
 0.649
EAQ08030.1
Polysaccharide deacetylase family protein; COG0726 Predicted xylanase/chitin deacetylase.
  
 
 0.649
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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