Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ05856.1Hypothetical protein; COG3822 ABC-type sugar transport system, auxiliary component. (236 aa)    
Predicted Functional Partners:
xylB
Xylulose kinase; COG1070 Sugar (pentulose and hexulose) kinases.
    
  0.845
xylA
COG2115 Xylose isomerase; Belongs to the xylose isomerase family.
     
  0.815
EAQ05857.1
Hypothetical protein; COG2071 Predicted glutamine amidotransferases.
       0.808
EAQ07621.1
Chlorophyll synthesis pathway, bchC; COG1063 Threonine dehydrogenase and related Zn-dependent dehydrogenases.
    
  0.720
EAQ07381.1
COG0246 Mannitol-1-phosphate/altronate dehydrogenases.
    
  0.503
EAQ05858.1
COG3193 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol.
       0.485
glcB
Malate synthase; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
       0.449
EAQ05827.1
Methylamine utilization protein MauG, putative; COG1858 Cytochrome c peroxidase.
 
     0.406
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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