Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05872.1COG0038 Chloride channel protein EriC. (556 aa)    
Predicted Functional Partners:
EAQ05873.1
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
       0.654
EAQ06159.1
Membrane protein, putative; COG0477 Permeases of the major facilitator superfamily.
  
     0.590
EAQ05292.1
Efflux transporter, RND family, MFP subunit; COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.579
bamD
Competence lipoprotein ComL, putative; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
       0.550
EAQ07837.1
Sodium:alanine symporter family protein; COG1115 Na+/alanine symporter.
   
    0.519
EAQ05920.1
Hypothetical protein.
  
     0.439
EAQ06013.1
COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.
  
     0.434
EAQ07781.1
Membrane protein, putative; COG0730 Predicted permeases.
  
    0.433
EAQ06728.1
Efflux transporter, RND family, MFP subunit; COG0845 Membrane-fusion protein.
  
     0.412
EAQ06524.1
Hypothetical protein; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
  
     0.408
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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