STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05906.1Transglycosylase SLT domain protein; COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains). (156 aa)    
Predicted Functional Partners:
hisH
Imidazole glycerol phosphate synthase subunit HisH; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.
   
   0.692
hisB
COG0131 Imidazoleglycerol-phosphate dehydratase.
       0.682
EAQ05846.1
Dihydroneopterin aldolase, putative; COG1539 Dihydroneopterin aldolase.
  
     0.547
EAQ07084.1
Membrane protein, putative; COG2215 ABC-type uncharacterized transport system, permease component; Belongs to the NiCoT transporter (TC 2.A.52) family.
  
     0.465
EAQ05903.1
Imidazoleglycerol-phosphate dehydratase; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
       0.458
EAQ07083.1
Hypothetical protein; COG3683 ABC-type uncharacterized transport system, periplasmic component.
  
     0.450
EAQ07975.1
Phosphatidylcholine synthase; Condenses choline with CDP-diglyceride to produce phosphatidylcholine and CMP; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
    0.450
EAQ08040.1
COG1376 Uncharacterized protein conserved in bacteria.
  
     0.431
EAQ06341.1
Type I secretion target repeat protein.
  
    0.425
EAQ06124.1
Hypothetical protein; COG3288 NAD/NADP transhydrogenase alpha subunit.
  
     0.408
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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