EAQ05922.1 protein (Yoonia vestfoldensis SKA53)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

EAQ05922.1

COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family. (475 aa)

Predicted Functional Partners:

glpK

0.828

rpsF

0.767

EAQ07822.1

0.752

rpsI

0.747

EAQ05923.1

0.743

EAQ07355.1

0.734

EAQ05924.1

0.727

EAQ06229.1

0.707

rpsH

0.705

rplK

0.703

Your Current Organism:

Yoonia vestfoldensis SKA53

NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EAQ05922.1	EAQ05923.1	SKA53_07451	SKA53_07456	COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.	HflC protein; HflC and HflK could regulate a protease.	0.743
EAQ05922.1	EAQ05924.1	SKA53_07451	SKA53_07461	COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.	HflK protein; HflC and HflK could encode or regulate a protease.	0.727
EAQ05922.1	EAQ06229.1	SKA53_07451	SKA53_04058	COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.	Membrane-associated zinc metalloprotease, putative; COG0750 Predicted membrane-associated Zn-dependent proteases 1.	0.707
EAQ05922.1	EAQ07355.1	SKA53_07451	SKA53_03126	COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.	Possible outer membrane protein.	0.734
EAQ05922.1	EAQ07822.1	SKA53_07451	SKA53_13333	COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.	COG0088 Ribosomal protein L4.	0.752
EAQ05922.1	glpK	SKA53_07451	SKA53_08181	COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.	Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.	0.828
EAQ05922.1	rplK	SKA53_07451	SKA53_13248	COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.	Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.703
EAQ05922.1	rpsF	SKA53_07451	SKA53_05775	COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.767
EAQ05922.1	rpsH	SKA53_07451	SKA53_13411	COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.	Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.	0.705
EAQ05922.1	rpsI	SKA53_07451	SKA53_04448	COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.	COG0103 Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.747
EAQ05923.1	EAQ05922.1	SKA53_07456	SKA53_07451	HflC protein; HflC and HflK could regulate a protease.	COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.	0.743
EAQ05923.1	EAQ05924.1	SKA53_07456	SKA53_07461	HflC protein; HflC and HflK could regulate a protease.	HflK protein; HflC and HflK could encode or regulate a protease.	0.998
EAQ05924.1	EAQ05922.1	SKA53_07461	SKA53_07451	HflK protein; HflC and HflK could encode or regulate a protease.	COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.	0.727
EAQ05924.1	EAQ05923.1	SKA53_07461	SKA53_07456	HflK protein; HflC and HflK could encode or regulate a protease.	HflC protein; HflC and HflK could regulate a protease.	0.998
EAQ06229.1	EAQ05922.1	SKA53_04058	SKA53_07451	Membrane-associated zinc metalloprotease, putative; COG0750 Predicted membrane-associated Zn-dependent proteases 1.	COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.	0.707
EAQ07355.1	EAQ05922.1	SKA53_03126	SKA53_07451	Possible outer membrane protein.	COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.	0.734
EAQ07822.1	EAQ05922.1	SKA53_13333	SKA53_07451	COG0088 Ribosomal protein L4.	COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family.	0.752
EAQ07822.1	rplK	SKA53_13333	SKA53_13248	COG0088 Ribosomal protein L4.	Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.992
EAQ07822.1	rpsF	SKA53_13333	SKA53_05775	COG0088 Ribosomal protein L4.	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.991
EAQ07822.1	rpsH	SKA53_13333	SKA53_13411	COG0088 Ribosomal protein L4.	Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.	0.997