Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05929.1Lipoprotein, putative; COG0419 ATPase involved in DNA repair. (463 aa)    
Predicted Functional Partners:
rne
Ribonuclease E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily.
     
  0.809
EAQ05749.1
Lipoprotein, putative; COG0797 Lipoproteins.
 
     0.775
EAQ07108.1
Hypothetical protein.
  
    0.771
EAQ07109.1
Hypothetical protein.
  
    0.765
EAQ06919.1
Hypothetical protein.
  
     0.739
EAQ07791.1
Hypothetical protein.
  
    0.725
EAQ07110.1
Hypothetical protein.
  
    0.716
EAQ07648.1
Hypothetical protein.
  
     0.713
EAQ06126.1
CpaB family protein; COG3745 Flp pilus assembly protein CpaB.
  
    0.710
EAQ07636.1
Hypothetical protein.
  
     0.707
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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