STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05934.1COG3713 Outer membrane protein V. (245 aa)    
Predicted Functional Partners:
rlmJ
Hypothetical protein; Specifically methylates the adenine in position 2030 of 23S rRNA.
       0.555
EAQ07079.1
Hypothetical protein.
  
     0.505
EAQ05936.1
COG4103 Uncharacterized protein conserved in bacteria.
       0.498
EAQ05682.1
Hypothetical protein.
  
     0.489
EAQ06640.1
Hypothetical protein.
  
     0.465
EAQ05937.1
Hypothetical protein; COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component.
       0.445
EAQ06484.1
COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase.
   
    0.441
EAQ05792.1
Hypothetical protein; COG3218 ABC-type uncharacterized transport system, auxiliary component.
  
     0.408
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.