Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rlmJHypothetical protein; Specifically methylates the adenine in position 2030 of 23S rRNA. (262 aa)    
Predicted Functional Partners:
EAQ05936.1
COG4103 Uncharacterized protein conserved in bacteria.
       0.760
EAQ05937.1
Hypothetical protein; COG3221 ABC-type phosphate/phosphonate transport system, periplasmic component.
       0.704
EAQ05934.1
COG3713 Outer membrane protein V.
       0.555
EAQ05938.1
ABC basic amino acid transporter, ATPase subunit; COG4598 ABC-type histidine transport system, ATPase component.
       0.417
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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