STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05946.1Polyhydroxyalkanoate synthesis repressor PhaR; COG5394 Uncharacterized protein conserved in bacteria. (178 aa)    
Predicted Functional Partners:
EAQ05947.1
Phasin, PhaP.
 
   
 0.907
EAQ05948.1
Poly-beta-hydroxybutyrate polymerase; COG3243 Poly(3-hydroxyalkanoate) synthetase.
 
   
 0.904
EAQ05949.1
Polyhydroxyalkanoate depolymerase, intracellular; COG4553 Poly-beta-hydroxyalkanoate depolymerase.
 
   
 0.870
fur
Transcriptional regulator, Fur family; COG0735 Fe2+/Zn2+ uptake regulation proteins; Belongs to the Fur family.
      
 0.578
fur-2
Ferric-uptake regulator; COG0735 Fe2+/Zn2+ uptake regulation proteins; Belongs to the Fur family.
      
 0.578
EAQ06355.1
Phospholipase, patatin-like family; COG1752 Predicted esterase of the alpha-beta hydrolase superfamily.
 
     0.563
EAQ07066.1
COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.
      
 0.436
EAQ06790.1
COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.
      
 0.420
EAQ07064.1
COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit.
      
 0.418
EAQ05673.1
COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit.
      
 0.418
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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