STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05949.1Polyhydroxyalkanoate depolymerase, intracellular; COG4553 Poly-beta-hydroxyalkanoate depolymerase. (422 aa)    
Predicted Functional Partners:
EAQ05948.1
Poly-beta-hydroxybutyrate polymerase; COG3243 Poly(3-hydroxyalkanoate) synthetase.
 
  
 0.992
EAQ05946.1
Polyhydroxyalkanoate synthesis repressor PhaR; COG5394 Uncharacterized protein conserved in bacteria.
 
   
 0.870
EAQ05947.1
Phasin, PhaP.
 
   
 0.869
EAQ05513.1
COG3509 Poly(3-hydroxybutyrate) depolymerase.
 
  
 0.593
EAQ06354.1
COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
   
 0.569
clpX
ATP-dependent protease ATP-binding subunit; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
   
    0.541
EAQ06621.1
Hypothetical protein.
   
    0.481
EAQ05660.1
NADH:ubiquinone oxidoreductase 41 kD complex I subunit; COG0468 RecA/RadA recombinase.
 
   
  0.471
EAQ06231.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
  
     0.465
EAQ06618.1
Beta-ketothiolase, acetoacetyl-CoA reductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  
   
 0.434
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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