Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05971.1COG0845 Membrane-fusion protein. (359 aa)    
Predicted Functional Partners:
EAQ05970.1
Putative cellulose synthase catalytic subunit protein; COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
 
 
 0.937
EAQ05346.1
ATPase; COG2274 ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain.
  
 0.765
EAQ05345.1
COG1538 Outer membrane protein.
  
 0.701
EAQ06918.1
COG1538 Outer membrane protein.
  
 0.701
EAQ05404.1
Permease, putative; COG0577 ABC-type antimicrobial peptide transport system, permease component.
  
  
 0.596
EAQ06061.1
Hypothetical protein; COG0642 Signal transduction histidine kinase.
     
 0.442
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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