STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ05979.1Putative diguanylate phosphodiesterase (EAL domain) with GAF sensor; COG2200 FOG: EAL domain. (224 aa)    
Predicted Functional Partners:
EAQ06061.1
Hypothetical protein; COG0642 Signal transduction histidine kinase.
 
 0.911
EAQ07558.1
Transcriptional regulator, PpsR; COG2202 FOG: PAS/PAC domain.
    
 
 0.909
EAQ06630.1
COG2199 FOG: GGDEF domain.
 
 0.905
EAQ07008.1
Two component diguanylate cyclase; COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain.
 
 0.891
EAQ05977.1
Hypothetical protein; COG2199 FOG: GGDEF domain.
 
 
 0.888
EAQ07807.1
Hypothetical protein; COG2199 FOG: GGDEF domain.
 
0.882
EAQ07462.1
Sensory box-containing diguanylate cyclase, putative; COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
 
0.880
EAQ05980.1
Potassium uptake transporter, transmembrane component, TrkH; COG0168 Trk-type K+ transport systems, membrane components.
       0.773
EAQ08009.1
COG0642 Signal transduction histidine kinase.
 
 0.645
EAQ06345.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
  
 0.602
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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