Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EAQ05985.1Hypothetical protein. (194 aa)    
Predicted Functional Partners:
EAQ06082.1
Probable penicillin-binding protein; COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
  
 0.781
EAQ06589.1
COG2020 putative protein-S-isoprenylcysteine methyltransferase.
  
     0.715
msrA
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
 
    
 0.689
EAQ07598.1
Transposase IS2020, hypothetical; COG3316 Transposase and inactivated derivatives.
  
     0.629
EAQ06586.1
Hypothetical protein.
 
     0.608
EAQ06499.1
Hypothetical protein.
    
 
 0.585
EAQ06035.1
COG0404 Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
  
     0.565
EAQ06590.1
Probable deoxyribodipyrimidine photolyase; COG3380 Predicted NAD/FAD-dependent oxidoreductase.
  
     0.555
EAQ06588.1
3-demethylubiquinone-9 3-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway. Belongs to the methyltransferase superfamily. UbiG/COQ3 family.
  
     0.542
EAQ05890.1
COG0768 Cell division protein FtsI/penicillin-binding protein 2.
   
 0.539
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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