STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06022.1Polysaccharide deacetylase family protein; COG0726 Predicted xylanase/chitin deacetylase. (470 aa)    
Predicted Functional Partners:
EAQ06021.1
COG2351 Transthyretin-like protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
 0.983
EAQ06070.1
COG2351 Transthyretin-like protein; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
 
 0.965
EAQ06023.1
COG3194 Ureidoglycolate hydrolase.
 
 
  0.962
EAQ06019.1
Membrane protein, putative; COG3748 Predicted membrane protein.
 
    0.840
EAQ08031.1
Membrane protein, putative; COG3748 Predicted membrane protein.
 
    0.837
EAQ08029.1
COG3194 Ureidoglycolate hydrolase.
 
 
  0.826
EAQ05331.1
COG4126 Hydantoin racemase.
 
  
  0.825
EAQ08030.1
Polysaccharide deacetylase family protein; COG0726 Predicted xylanase/chitin deacetylase.
  
 
  0.817
EAQ08183.1
N-carbamoyl-L-amino acid amidohydrolase; COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases.
  
  0.814
EAQ05316.1
Hypothetical protein.
    
  0.802
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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