STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06023.1COG3194 Ureidoglycolate hydrolase. (161 aa)    
Predicted Functional Partners:
EAQ06022.1
Polysaccharide deacetylase family protein; COG0726 Predicted xylanase/chitin deacetylase.
 
 
  0.958
EAQ06752.1
COG3257 Uncharacterized protein, possibly involved in glyoxylate utilization.
 
  
  0.854
EAQ06025.1
COG3257 Uncharacterized protein, possibly involved in glyoxylate utilization.
 
  
  0.853
EAQ08030.1
Polysaccharide deacetylase family protein; COG0726 Predicted xylanase/chitin deacetylase.
 
 
  0.833
glcB
Malate synthase; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
    
 0.760
EAQ08031.1
Membrane protein, putative; COG3748 Predicted membrane protein.
 
    0.755
ureA
COG0831 Urea amidohydrolase (urease) gamma subunit; Belongs to the urease gamma subunit family.
    
  0.754
EAQ06019.1
Membrane protein, putative; COG3748 Predicted membrane protein.
 
    0.753
ureB
Urease, beta subunit; COG0832 Urea amidohydrolase (urease) beta subunit; Belongs to the urease beta subunit family.
    
  0.753
ureC
Urease, alpha subunit; COG0804 Urea amidohydrolase (urease) alpha subunit.
    
  0.753
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.