Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EAQ06032.1Probable AMP-binding protein; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II. (552 aa)    
Predicted Functional Partners:
EAQ06033.1
COG1024 Enoyl-CoA hydratase/carnithine racemase.
 
  0.877
EAQ06061.1
Hypothetical protein; COG0642 Signal transduction histidine kinase.
    
 0.801
EAQ06035.1
COG0404 Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
 
  
  0.780
EAQ06712.1
COG1960 Acyl-CoA dehydrogenases.
  
 
  0.764
EAQ06034.1
OsmC/Ohr family protein; COG1764 Predicted redox protein, regulator of disulfide bond formation.
       0.757
EAQ07913.1
COG1960 Acyl-CoA dehydrogenases.
   
 
  0.734
EAQ07148.1
Formate dehydrogenase, beta subunit; COG1905 NADH:ubiquinone oxidoreductase 24 kD subunit.
    
   0.732
EAQ05758.1
Hypothetical protein; COG1082 Sugar phosphate isomerases/epimerases.
    
 0.712
EAQ07066.1
COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.
    
  0.695
EAQ06790.1
COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.
    
  0.695
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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