STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06048.1Putative decarboxylase. (425 aa)    
Predicted Functional Partners:
EAQ06050.1
Hypothetical protein; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
  0.974
EAQ06051.1
Hypothetical protein; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
    0.870
EAQ05256.1
COG0331 (acyl-carrier-protein) S-malonyltransferase.
  
 
  0.853
EAQ06049.1
Hypothetical protein; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
 
     0.853
EAQ06047.1
malonyl-CoA synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
 
  
 0.840
EAQ06046.1
Quinone oxidoreductase, putative; COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.
 
  
  0.788
EAQ06044.1
Alkyl hydroperoxide reductase/thiol-specific antioxidant; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.
       0.737
EAQ06045.1
Hypothetical protein.
       0.737
EAQ06052.1
Regulatory protein GntR, HTH:GntR, C-terminal; COG1802 Transcriptional regulators.
 
    0.672
EAQ07057.1
COG1525 Micrococcal nuclease (thermonuclease) homologs.
  
     0.477
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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