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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06052.1Regulatory protein GntR, HTH:GntR, C-terminal; COG1802 Transcriptional regulators. (229 aa)    
Predicted Functional Partners:
EAQ06051.1
Hypothetical protein; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
     0.839
EAQ06050.1
Hypothetical protein; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.771
EAQ06048.1
Putative decarboxylase.
 
    0.672
EAQ06049.1
Hypothetical protein; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
 
     0.667
EAQ06877.1
Pyruvate dehydrogenase complex repressor; COG2186 Transcriptional regulators.
  
  
 0.640
EAQ05564.1
Hypothetical protein; COG2186 Transcriptional regulators.
  
  
 0.617
EAQ06531.1
COG0440 Acetolactate synthase, small (regulatory) subunit.
   
    0.475
EAQ06053.1
Putative potassium channel protein; COG1226 Kef-type K+ transport systems, predicted NAD-binding component.
       0.459
EAQ06047.1
malonyl-CoA synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
 
     0.454
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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