STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06078.1Hypothetical protein. (123 aa)    
Predicted Functional Partners:
EAQ06784.1
Hypothetical protein.
  
     0.721
EAQ05273.1
Possible transcriptional activator; COG2771 DNA-binding HTH domain-containing proteins.
  
     0.714
EAQ05272.1
Transcriptional regulator, LuxR family; COG2771 DNA-binding HTH domain-containing proteins.
  
     0.707
EAQ08213.1
Hypothetical protein.
  
     0.700
EAQ07658.1
COG3210 Large exoproteins involved in heme utilization or adhesion.
  
     0.661
EAQ06077.1
COG0408 Coproporphyrinogen III oxidase.
       0.640
EAQ06694.1
Hypothetical protein; COG0621 2-methylthioadenine synthetase.
  
     0.608
EAQ06635.1
Dihydroxy-acid dehydratase; COG1157 Flagellar biosynthesis/type III secretory pathway ATPase.
  
     0.603
EAQ08130.1
Hypothetical protein; COG2183 Transcriptional accessory protein.
  
     0.599
EAQ07166.1
Possible flagellar switch protein FliM; COG0477 Permeases of the major facilitator superfamily.
  
     0.598
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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