Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EAQ06123.1Transglycosylase, Slt family; COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains). (279 aa)    
Predicted Functional Partners:
EAQ06124.1
Hypothetical protein; COG3288 NAD/NADP transhydrogenase alpha subunit.
 
    0.710
EAQ06130.1
Type II/IV secretion system protein, TadA subfamily; COG4962 Flp pilus assembly protein, ATPase CpaF.
 
    0.557
EAQ06133.1
Hypothetical protein; COG0457 FOG: TPR repeat.
 
     0.550
EAQ06134.1
Lipoprotein, putative; COG0457 FOG: TPR repeat.
 
     0.505
EAQ06135.1
Hypothetical protein.
 
     0.488
EAQ07284.1
N-acetylmuramoyl-L-alanine amidase, family 3; COG0860 N-acetylmuramoyl-L-alanine amidase.
 
  
 0.443
EAQ08175.1
COG1360 Flagellar motor protein.
 
  
 0.430
EAQ06126.1
CpaB family protein; COG3745 Flp pilus assembly protein CpaB.
 
     0.420
EAQ06128.1
OmpA family protein; COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
 
     0.417
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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