Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06135.1Hypothetical protein. (163 aa)    
Predicted Functional Partners:
EAQ06134.1
Lipoprotein, putative; COG0457 FOG: TPR repeat.
 
     0.965
EAQ06129.1
ATPase, putative; COG0784 FOG: CheY-like receiver.
 
  
 0.959
EAQ06131.1
COG4965 Flp pilus assembly protein TadB.
 
  
 0.958
EAQ06133.1
Hypothetical protein; COG0457 FOG: TPR repeat.
 
     0.950
EAQ06126.1
CpaB family protein; COG3745 Flp pilus assembly protein CpaB.
 
  
 0.938
EAQ06127.1
Outer membrane general secretion pathway protein, Secretin; COG4964 Flp pilus assembly protein, secretin CpaC; Belongs to the bacterial secretin family.
 
  
 0.928
EAQ06124.1
Hypothetical protein; COG3288 NAD/NADP transhydrogenase alpha subunit.
 
  
 0.909
EAQ06136.1
Hypothetical protein; COG0606 Predicted ATPase with chaperone activity.
 
     0.890
EAQ06132.1
Type II/IV secretion system protein, TadC subfamily; COG2064 Flp pilus assembly protein TadC.
 
     0.877
EAQ06128.1
OmpA family protein; COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
 
     0.850
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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