Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ06138.1Hypothetical protein; COG1407 Predicted ICC-like phosphoesterases. (228 aa)    
Predicted Functional Partners:
EAQ06137.1
ATP-dependent helicase, DEAD/DEAH box family; COG1201 Lhr-like helicases.
 
    0.968
EAQ07137.1
Hypothetical protein; COG1236 Predicted exonuclease of the beta-lactamase fold involved in RNA processing.
 
     0.801
EAQ07136.1
DNA ligase; COG1793 ATP-dependent DNA ligase.
 
     0.781
EAQ06136.1
Hypothetical protein; COG0606 Predicted ATPase with chaperone activity.
       0.693
EAQ07130.1
Hypothetical protein.
  
     0.682
EAQ07514.1
Hydrolase, NUDIX family; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; Belongs to the Nudix hydrolase family.
  
     0.404
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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