Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EAQ06159.1Membrane protein, putative; COG0477 Permeases of the major facilitator superfamily. (409 aa)    
Predicted Functional Partners:
EAQ05401.1
COG3022 Uncharacterized protein conserved in bacteria; Belongs to the UPF0246 family.
  
    0.839
msrA
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
       0.728
prmA
Ribosomal protein L11 methyltransferase, putative; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family.
       0.648
EAQ05872.1
COG0038 Chloride channel protein EriC.
  
     0.590
EAQ06156.1
Hypothetical protein.
 
     0.557
EAQ06160.1
Iron-sulfur-binding protein, RdxA/RdxB/FixG family; COG0348 Polyferredoxin.
       0.508
EAQ06161.1
fixH protein, putative.
       0.479
EAQ06162.1
Copper-translocating P-type ATPase; COG2217 Cation transport ATPase.
       0.479
EAQ06163.1
Hypothetical protein.
       0.479
EAQ06870.1
Integral membrane protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.
  
     0.440
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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