Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07823.1Membrane protein, putative; COG0477 Permeases of the major facilitator superfamily. (264 aa)    
Predicted Functional Partners:
EAQ06204.1
Membrane protein, putative; COG0477 Permeases of the major facilitator superfamily.
     0.987
EAQ07001.1
COG3239 Fatty acid desaturase.
  
     0.448
EAQ07611.1
Hypothetical protein; COG0145 N-methylhydantoinase A/acetone carboxylase, beta subunit.
  
     0.444
EAQ06203.1
4-coumarate:CoA ligase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
    
  0.433
EAQ05517.1
Hypothetical protein.
  
     0.407
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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