Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EAQ07827.1SlyX protein, putative; COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins. (120 aa)    
Predicted Functional Partners:
EAQ07825.1
COG3705 ATP phosphoribosyltransferase involved in histidine biosynthesis.
 
     0.760
EAQ06884.1
Hypothetical protein.
  
     0.745
hisG
ATP phosphoribosyltransferase; Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of HisG enzymatic activity.
       0.722
hisS
COG0124 Histidyl-tRNA synthetase.
       0.722
EAQ06810.1
Rhomboid family protein; COG0705 Uncharacterized membrane protein (homolog of Drosophila rhomboid).
  
     0.702
EAQ06715.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
  
     0.689
EAQ07281.1
COG1426 Uncharacterized protein conserved in bacteria.
  
     0.665
EAQ05914.1
Hypothetical protein.
  
     0.653
EAQ07939.1
Arginine/ornithine transport system ATPase; COG1053 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
  
     0.629
EAQ06678.1
Hypothetical protein.
  
     0.629
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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