STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07838.1COG0589 Universal stress protein UspA and related nucleotide-binding proteins. (146 aa)    
Predicted Functional Partners:
EAQ07837.1
Sodium:alanine symporter family protein; COG1115 Na+/alanine symporter.
 
    0.965
EAQ06178.1
Cytochrome c oxidase, cbb3-type, subunit IV.
 
  
 0.513
EAQ06024.1
COG2233 Xanthine/uracil permeases.
  
    0.493
dksA
dnaK suppressor protein, putative; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.
   
  
 0.454
EAQ06879.1
ADA regulatory protein; COG2207 AraC-type DNA-binding domain-containing proteins.
   
    0.414
EAQ07165.1
Sensor histidine kinase; COG0591 Na+/proline symporter.
      
 0.410
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.