EAQ07841.1 protein (Yoonia vestfoldensis SKA53)

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Score

EAQ07841.1

COG1278 Cold shock proteins. (80 aa)

Predicted Functional Partners:

rpsL

0.620

rpsQ

0.613

rpmC

0.582

rplX

0.558

rplC

0.541

rpsS

0.541

rplO

0.528

rpsK

0.527

rplT

0.525

rplP

0.515

Your Current Organism:

Yoonia vestfoldensis SKA53

NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EAQ07841.1	rplC	SKA53_08964	SKA53_13328	COG1278 Cold shock proteins.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.541
EAQ07841.1	rplO	SKA53_08964	SKA53_13436	COG1278 Cold shock proteins.	Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.528
EAQ07841.1	rplP	SKA53_08964	SKA53_13366	COG1278 Cold shock proteins.	50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	0.515
EAQ07841.1	rplT	SKA53_08964	SKA53_10219	COG1278 Cold shock proteins.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.525
EAQ07841.1	rplX	SKA53_08964	SKA53_13396	COG1278 Cold shock proteins.	Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	0.558
EAQ07841.1	rpmC	SKA53_08964	SKA53_13381	COG1278 Cold shock proteins.	COG0255 Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.582
EAQ07841.1	rpsK	SKA53_08964	SKA53_13456	COG1278 Cold shock proteins.	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.527
EAQ07841.1	rpsL	SKA53_08964	SKA53_13293	COG1278 Cold shock proteins.	30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.620
EAQ07841.1	rpsQ	SKA53_08964	SKA53_13386	COG1278 Cold shock proteins.	Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.613
EAQ07841.1	rpsS	SKA53_08964	SKA53_13351	COG1278 Cold shock proteins.	Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.541
rplC	EAQ07841.1	SKA53_13328	SKA53_08964	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	COG1278 Cold shock proteins.	0.541
rplC	rplO	SKA53_13328	SKA53_13436	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.998
rplC	rplP	SKA53_13328	SKA53_13366	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.	0.998
rplC	rplT	SKA53_13328	SKA53_10219	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.993
rplC	rplX	SKA53_13328	SKA53_13396	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	0.996
rplC	rpmC	SKA53_13328	SKA53_13381	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	COG0255 Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.994
rplC	rpsK	SKA53_13328	SKA53_13456	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.	0.994
rplC	rpsL	SKA53_13328	SKA53_13293	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.	0.994
rplC	rpsQ	SKA53_13328	SKA53_13386	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.996
rplC	rpsS	SKA53_13328	SKA53_13351	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.996