Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EAQ07846.1Metallo-beta-lactamase family protein; COG0491 Zn-dependent hydrolases, including glyoxylases. (303 aa)    
Predicted Functional Partners:
gltX
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
       0.655
EAQ06975.1
Transcriptional regulator, LuxR family; COG2771 DNA-binding HTH domain-containing proteins.
  
 
   0.511
EAQ05761.1
Hypothetical protein; COG2771 DNA-binding HTH domain-containing proteins.
  
 
   0.503
EAQ05544.1
Hypothetical protein; COG0748 putative heme iron utilization protein.
  
     0.453
EAQ05528.1
COG3108 Uncharacterized protein conserved in bacteria.
   
    0.451
EAQ07437.1
Tat (twin-arginine translocation) pathway signal sequence domain protein; COG3108 Uncharacterized protein conserved in bacteria.
   
    0.451
EAQ06323.1
Rhodanese domain protein; COG0607 Rhodanese-related sulfurtransferase.
  
 0.431
EAQ08103.1
Hypothetical protein; COG0607 Rhodanese-related sulfurtransferase.
  
 0.431
EAQ07679.1
Hypothetical protein.
 
     0.423
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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