STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07849.1COG3046 Uncharacterized protein related to deoxyribodipyrimidine photolyase. (507 aa)    
Predicted Functional Partners:
EAQ07850.1
Hypothetical protein; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
 
     0.940
EAQ05853.1
DNA photolyase-like protein; COG0415 Deoxyribodipyrimidine photolyase.
 
   
 0.659
leuA
2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily.
       0.570
EAQ05456.1
COG0415 Deoxyribodipyrimidine photolyase; Belongs to the DNA photolyase family.
 
   
 0.513
EAQ05860.1
COG4338 Uncharacterized protein conserved in bacteria.
 
     0.497
EAQ07683.1
Putative cyclopropane/cyclopropene fatty acid synthesis protein.
 
   
 0.497
EAQ06590.1
Probable deoxyribodipyrimidine photolyase; COG3380 Predicted NAD/FAD-dependent oxidoreductase.
 
     0.472
EAQ07684.1
Putative cyclopropane/cyclopropene fatty acid synthesis protein, flavin amine oxidase; COG2907 Predicted NAD/FAD-binding protein.
 
   
 0.468
EAQ06015.1
COG0386 Glutathione peroxidase; Belongs to the glutathione peroxidase family.
     
 0.442
EAQ07682.1
Sugar/cation symporter, GPH family; COG2211 Na+/melibiose symporter and related transporters.
 
   
 0.410
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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