STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07852.1Rod shape-determining protein MreB; COG1077 Actin-like ATPase involved in cell morphogenesis. (345 aa)    
Predicted Functional Partners:
EAQ07853.1
Rod shape-determining protein, MreC; COG1792 Cell shape-determining protein.
 
 
 0.998
mrdB
Rod shape-determining protein MreD; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
 
 0.980
EAQ07855.1
COG0768 Cell division protein FtsI/penicillin-binding protein 2.
 
 
 
 0.978
EAQ07281.1
COG1426 Uncharacterized protein conserved in bacteria.
  
 
 0.977
ftsZ
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
  
 
 0.862
EAQ07854.1
Membrane protein, putative; COG0477 Permeases of the major facilitator superfamily.
       0.803
EAQ07857.1
D-isomer specific 2-hydroxyacid dehydrogenase family protein; COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases.
       0.803
EAQ05890.1
COG0768 Cell division protein FtsI/penicillin-binding protein 2.
 
 
 
 0.730
EAQ05884.1
COG0772 Bacterial cell division membrane protein; Belongs to the SEDS family.
 
 
 0.723
EAQ06082.1
Probable penicillin-binding protein; COG1686 D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
 
 
 0.715
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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