Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EAQ07853.1Rod shape-determining protein, MreC; COG1792 Cell shape-determining protein. (307 aa)    
Predicted Functional Partners:
EAQ07852.1
Rod shape-determining protein MreB; COG1077 Actin-like ATPase involved in cell morphogenesis.
 
 
 0.996
EAQ07855.1
COG0768 Cell division protein FtsI/penicillin-binding protein 2.
 
 
 0.989
mrdB
Rod shape-determining protein MreD; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
  
 0.968
EAQ07854.1
Membrane protein, putative; COG0477 Permeases of the major facilitator superfamily.
 
     0.874
EAQ07484.1
COG2003 DNA repair proteins; Belongs to the UPF0758 family.
  
  
 0.870
EAQ07857.1
D-isomer specific 2-hydroxyacid dehydrogenase family protein; COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases.
 
     0.869
EAQ05890.1
COG0768 Cell division protein FtsI/penicillin-binding protein 2.
 
 
 0.795
EAQ07281.1
COG1426 Uncharacterized protein conserved in bacteria.
 
 
 
 0.749
EAQ07973.1
COG3159 Uncharacterized protein conserved in bacteria.
  
     0.718
tgt
Queuine tRNA-ribosyltransferase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form t [...]
  
  
 0.642
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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