Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EAQ07875.1Hypothetical protein. (329 aa)    
Predicted Functional Partners:
EAQ07877.1
Hypothetical protein; COG1008 NADH:ubiquinone oxidoreductase subunit 4 (chain M).
 
     0.961
EAQ07876.1
Hypothetical protein; COG1051 ADP-ribose pyrophosphatase.
 
     0.959
EAQ07873.1
Hypothetical protein.
 
     0.956
EAQ07874.1
Hypothetical protein.
 
     0.956
EAQ07878.1
COG1145 Ferredoxin.
 
     0.903
EAQ07868.1
COG2864 Cytochrome b subunit of formate dehydrogenase.
 
     0.837
EAQ07865.1
Hypothetical protein; COG2319 FOG: WD40 repeat.
 
     0.830
EAQ07872.1
Putative chaperone; COG3381 Uncharacterized component of anaerobic dehydrogenases.
 
     0.809
EAQ07870.1
Formate dehydrogenase, alpha subunit, putative; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
     0.772
EAQ07869.1
Formate dehydrogenase iron-sulfur subunit; COG0437 Fe-S-cluster-containing hydrogenase components 1.
 
     0.644
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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