Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EAQ07881.1COG4681 Uncharacterized protein conserved in bacteria. (184 aa)    
Predicted Functional Partners:
EAQ06369.1
Phosphate transport system regulatory protein PhoU; Plays a role in the regulation of phosphate uptake.
   
    0.646
EAQ07993.1
Phosphate transport system regulatory protein; Plays a role in the regulation of phosphate uptake.
   
    0.646
EAQ07775.1
COG0681 Signal peptidase I; Belongs to the peptidase S26 family.
   
    0.642
EAQ07883.1
Hypothetical protein; COG2031 Short chain fatty acids transporter.
       0.558
EAQ07882.1
Immunogenic protein; COG2358 TRAP-type uncharacterized transport system, periplasmic component.
       0.553
EAQ07397.1
COG3170 Tfp pilus assembly protein FimV.
   
    0.547
EAQ07411.1
Sigma-54 factor (RpoN2); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
   
    0.523
EAQ07884.1
Hypothetical permease; COG4666 TRAP-type uncharacterized transport system, fused permease components.
       0.484
EAQ07879.1
Hypothetical protein; COG3842 ABC-type spermidine/putrescine transport systems, ATPase components.
  
    0.476
EAQ07880.1
Sulfate/tungstate uptake family ABC transporter, permease protein; COG4662 ABC-type tungstate transport system, periplasmic component.
       0.466
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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