STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07882.1Immunogenic protein; COG2358 TRAP-type uncharacterized transport system, periplasmic component. (382 aa)    
Predicted Functional Partners:
EAQ07884.1
Hypothetical permease; COG4666 TRAP-type uncharacterized transport system, fused permease components.
 
    0.951
EAQ07883.1
Hypothetical protein; COG2031 Short chain fatty acids transporter.
 
    0.942
EAQ06242.1
Hypothetical protein; COG3833 ABC-type maltose transport systems, permease component.
 
    0.859
EAQ07881.1
COG4681 Uncharacterized protein conserved in bacteria.
       0.553
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.