STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07889.1COG0789 Predicted transcriptional regulators. (132 aa)    
Predicted Functional Partners:
EAQ08212.1
Glutamine-pyruvate aminotransferase; COG0067 Glutamate synthase domain 1.
    
 0.890
EAQ07890.1
Copper-translocating P-type ATPase; COG2217 Cation transport ATPase.
 
  
 0.849
rpoD
RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.787
EAQ07462.1
Sensory box-containing diguanylate cyclase, putative; COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
    
 0.769
EAQ07807.1
Hypothetical protein; COG2199 FOG: GGDEF domain.
    
 0.769
EAQ08051.1
CobL, precorrin-6Y C5,15-methyltransferase; COG2241 Precorrin-6B methylase 1.
     
  0.750
ribB
Bifunctional GTP cyclohydrolaseII/3,4-dihydroxy-2butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
     
  0.723
EAQ07926.1
Phosphate acetyltransferase; COG0281 Malic enzyme.
    
  0.723
EAQ07520.1
Phosphate acetyltransferase; COG0281 Malic enzyme.
    
  0.723
EAQ07066.1
COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.
     
  0.719
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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