STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07891.127kDa outer membrane protein; COG1651 Protein-disulfide isomerase. (241 aa)    
Predicted Functional Partners:
EAQ07892.1
COG1376 Uncharacterized protein conserved in bacteria.
 
   
 0.741
EAQ06338.1
COG1495 Disulfide bond formation protein DsbB.
  
 
 0.704
EAQ07890.1
Copper-translocating P-type ATPase; COG2217 Cation transport ATPase.
 
 
   0.556
EAQ07642.1
Thiol:disulfide interchange protein, DsbA family; COG1651 Protein-disulfide isomerase.
  
     0.536
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.522
EAQ07889.1
COG0789 Predicted transcriptional regulators.
 
     0.483
EAQ07899.1
Chemotaxis response regulator; COG0784 FOG: CheY-like receiver.
  
    0.483
EAQ07893.1
Hypothetical protein; COG1366 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).
  
    0.434
EAQ07894.1
Chemotaxis regulator protein; COG0784 FOG: CheY-like receiver.
       0.418
EAQ07895.1
COG0643 Chemotaxis protein histidine kinase and related kinases.
       0.418
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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