STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07909.1COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism. (164 aa)    
Predicted Functional Partners:
EAQ07910.1
COG2050 Uncharacterized protein, possibly involved in aromatic compounds catabolism.
 
  
0.908
EAQ07908.1
DNA-damage-inducible protein F; COG0534 Na+-driven multidrug efflux pump.
 
     0.881
EAQ05467.1
COG2124 Cytochrome P450.
  
 
  0.761
EAQ06947.1
Ferredoxin; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
  
 
  0.743
EAQ07911.1
Transcriptional regulator, MerR family; COG0789 Predicted transcriptional regulators.
  
    0.703
EAQ07912.1
Transcriptional regulator, MerR family; COG0789 Predicted transcriptional regulators.
  
    0.562
EAQ07916.1
enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase /3-hydroxybutyryl-CoA epimerase; COG1024 Enoyl-CoA hydratase/carnithine racemase.
 
 0.528
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
     0.503
EAQ06922.1
Hypothetical protein.
  
     0.488
EAQ07961.1
Hypothetical protein; COG0778 Nitroreductase.
  
    0.466
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.