STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07912.1Transcriptional regulator, MerR family; COG0789 Predicted transcriptional regulators. (133 aa)    
Predicted Functional Partners:
EAQ08212.1
Glutamine-pyruvate aminotransferase; COG0067 Glutamate synthase domain 1.
    
 0.890
EAQ07462.1
Sensory box-containing diguanylate cyclase, putative; COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
    
 0.769
EAQ07807.1
Hypothetical protein; COG2199 FOG: GGDEF domain.
    
 0.769
EAQ08051.1
CobL, precorrin-6Y C5,15-methyltransferase; COG2241 Precorrin-6B methylase 1.
     
  0.750
ribB
Bifunctional GTP cyclohydrolaseII/3,4-dihydroxy-2butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
     
  0.723
EAQ07926.1
Phosphate acetyltransferase; COG0281 Malic enzyme.
    
  0.723
EAQ07520.1
Phosphate acetyltransferase; COG0281 Malic enzyme.
    
  0.723
EAQ07066.1
COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.
     
  0.719
EAQ06790.1
COG1884 Methylmalonyl-CoA mutase, N-terminal domain/subunit.
     
  0.719
rpoB
DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.699
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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