Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
Databases
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[Homology]
Score
EAQ07956.1Hypothetical protein. (178 aa)    
Predicted Functional Partners:
EAQ06675.1
Carboxyl-terminal protease family protein; COG0793 Periplasmic protease; Belongs to the peptidase S41A family.
   
   0.589
EAQ07955.1
Hypothetical protein.
       0.586
EAQ07482.1
Putative NAD-specific glutamate dehydrogenase encoded in antisense gene pair with dnaKJ.
  
     0.553
ribB
Bifunctional GTP cyclohydrolaseII/3,4-dihydroxy-2butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.521
EAQ06517.1
COG0840 Methyl-accepting chemotaxis protein.
     
  0.519
EAQ06858.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
     
  0.519
EAQ06603.1
Hypothetical protein; COG1716 FOG: FHA domain.
  
 
  0.503
EAQ06127.1
Outer membrane general secretion pathway protein, Secretin; COG4964 Flp pilus assembly protein, secretin CpaC; Belongs to the bacterial secretin family.
  
 0.494
EAQ07957.1
COG1272 Predicted membrane protein, hemolysin III homolog.
       0.466
EAQ05446.1
Coproporphyrinogen III oxidase; COG0591 Na+/proline symporter.
  
     0.460
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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