Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
EAQ07958.1Hypothetical protein; COG0501 Zn-dependent protease with chaperone function. (239 aa)    
Predicted Functional Partners:
ribB
Bifunctional GTP cyclohydrolaseII/3,4-dihydroxy-2butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.800
EAQ06674.1
Hypothetical protein; COG4942 Membrane-bound metallopeptidase.
 
 
   0.726
EAQ06517.1
COG0840 Methyl-accepting chemotaxis protein.
    
  0.702
EAQ06858.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
    
  0.702
EAQ07959.1
Hypothetical protein.
       0.695
EAQ07960.1
Deacetylase / probable acetylpolyamine aminohydrolase; COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein.
       0.543
EAQ06345.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
    
  0.502
EAQ06346.1
Methyl-accepting chemotaxis protein McpD; COG2202 FOG: PAS/PAC domain.
    
  0.502
EAQ06675.1
Carboxyl-terminal protease family protein; COG0793 Periplasmic protease; Belongs to the peptidase S41A family.
   
   0.481
EAQ06320.1
COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
    0.467
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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