Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ07959.1Hypothetical protein. (77 aa)    
Predicted Functional Partners:
EAQ07960.1
Deacetylase / probable acetylpolyamine aminohydrolase; COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein.
       0.776
EAQ06449.1
Hypothetical protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.
  
     0.716
EAQ05947.1
Phasin, PhaP.
  
     0.711
EAQ07958.1
Hypothetical protein; COG0501 Zn-dependent protease with chaperone function.
       0.695
EAQ07265.1
Hypothetical protein.
  
     0.687
EAQ06715.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
  
     0.687
EAQ07919.1
Hypothetical protein.
  
     0.672
EAQ06173.1
Hypothetical protein.
  
     0.628
EAQ07961.1
Hypothetical protein; COG0778 Nitroreductase.
       0.617
EAQ07962.1
Membrane protein, putative.
       0.617
Your Current Organism:
Yoonia vestfoldensis SKA53
NCBI taxonomy Id: 314232
Other names: Loktanella vestfoldensis SKA53, Y. vestfoldensis SKA53
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